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Kim, Donghyuk (김동혁)

Department
School of Energy and Chemical Engineering(에너지화학공학과)
Website
https://sites.google.com/view/systemskimlab
Lab
Systems Biology and Machine Learning Lab. (시스템생물학 머신러닝 실험실)
Research Keywords
시스템생물학, 머신러닝, 대사공학, 차세대염기서열분석법, Systems Biology, Machine Learning, Metabolic engineering, NGS
Research Interests
The research areas of Systems Biology and Machine Learning Lab are primarily based on the systems biology and machine learning approaches and their applications to study - Transcriptional regulation of bacterial pathogens including Salmonella and E. coli- Characterization of high-value bacterial strains- Anti-microbial resistance- Machine learning approaches for biological information
We have been applying the systems biology approaches to study bacteria, but there are also collaborators who expect us to apply those approaches to other types of organisms including yeast, fungi, and human cells.
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Issue DateTitleAuthor(s)TypeViewAltmetrics
2018-11Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655Gao, Ye; Yurkovich, James T.; Seo, Sang Woo, et alARTICLE635 Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
2018-10Coordination-driven self-assembly and anticancer studies of thiophene-derived donor and arene ruthenium acceptorsKim, Taegeun; Song, Hae Seong; Singh, Jatinder, et alARTICLE887 Coordination-driven self-assembly and anticancer studies of thiophene-derived donor and arene ruthenium acceptors
2018-10Characterization of the Lytic Bacteriophage phiEaP-8 Effective against Both Erwinia amylovora and Erwinia pyrifoliae Causing Severe Diseases in Apple and PearPark, Jungkum; Lee, Gyu Min; Kim, Donghyuk, et alARTICLE789 Characterization of the Lytic Bacteriophage phiEaP-8 Effective against Both Erwinia amylovora and Erwinia pyrifoliae Causing Severe Diseases in Apple and Pear
2018-10Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflowBrunk, Elizabeth; Chang, Roger L.; Xia, Jing, et alARTICLE630 Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow
2018-10Basics of genome-scale metabolic modeling and applications on C1-utilizationKabimoldayev, Ilyas; Anh Duc Nguyen; Yang, Laurence, et alARTICLE610 Basics of genome-scale metabolic modeling and applications on C1-utilization
2018-06Draft genome sequence of lytic bacteriophage CP3 infecting anaerobic bacterial pathogen Clostridium perfringensKim, Youngju; Ko, Seyoung; Yeon, Young Eun, et alARTICLE762 Draft genome sequence of lytic bacteriophage CP3 infecting anaerobic bacterial pathogen Clostridium perfringens
2018-06Draft genome sequence of lytic bacteriophage KP1 infecting bacterial pathogen Klebsiella pneumoniaeKim, Youngju; Bang, Ina; Yeon, Young Eun, et alARTICLE806 Draft genome sequence of lytic bacteriophage KP1 infecting bacterial pathogen Klebsiella pneumoniae
2018-05Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2,3-butanediol production from methaneAnh Duc Nguyen; Hwang, In Yeub; Lee, Ok Kyung, et alARTICLE752 Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2,3-butanediol production from methane
2018-04Draft genome sequence of a bacterial plant pathogen Erwinia pyrifoliae strain EpK1/15 isolated from an apple twig showing black shoot blightLee, Gyu Min; Oh, Eom-Ji; Ko, Seyoung, et alARTICLE681 Draft genome sequence of a bacterial plant pathogen Erwinia pyrifoliae strain EpK1/15 isolated from an apple twig showing black shoot blight
2018-04Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRPKim, Donghyuk; Seo, Sang Woo; Gao, Ye, et alARTICLE764 Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP
2018-04Draft genome sequence of lytic bacteriophage SA7 infecting Staphylococcus aureus isolatesKim, Youngju; Lee, Gyu Min; Taizhanova, Assiya, et alARTICLE617 Draft genome sequence of lytic bacteriophage SA7 infecting Staphylococcus aureus isolates
2018-03Draft genome sequence of lytic bacteriophage CF1 infecting Citrobacter freundii isolatesKim, Youngju; Ko, Seyoung; Yeon, Young Eun, et alARTICLE757 Draft genome sequence of lytic bacteriophage CF1 infecting Citrobacter freundii isolates
2018-02Isolation and identification of new bacterial stains producing equol from Pueraria lobata extract fermentationKwon, Jeong Eun; Lim, Jaewon; Kim, Inhye, et alARTICLE641 Isolation and identification of new bacterial stains producing equol from Pueraria lobata extract fermentation
2018-02Multiple plasmid-borne virulence genes of Clavibacter michiganensis ssp capsici critical for disease development in pepperHwang, In Sun; Oh, Eom-Ji; Kim, Donghyuk, et alARTICLE759 Multiple plasmid-borne virulence genes of Clavibacter michiganensis ssp capsici critical for disease development in pepper
2017-09Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activitiesFang, Xin; Sastry, Anand; Mih, Nathan, et alARTICLE680 Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities
2017-07Coordination-Driven Self-Assembly Using Ditopic Pyridyl-Pyrazolyl Donor and p-Cymene Ru(II) Acceptors: [2]Catenane Synthesis and Anticancer ActivitiesJo, Jae-Ho; Singh, Nem; Kim, Donghyuk, et alARTICLE831 Coordination-Driven Self-Assembly Using Ditopic Pyridyl-Pyrazolyl Donor and p-Cymene Ru(II) Acceptors: [2]Catenane Synthesis and Anticancer Activities
2017-07Highly efficient silver nanowire/PEDPT:PSS composite microelectrodes via poly(ethylene glycol) photolithographyKim, Dabum; Ko, Youngsang; Kim, Wooki, et alARTICLE538 Highly efficient silver nanowire/PEDPT:PSS composite microelectrodes via poly(ethylene glycol) photolithography
2017-07Selective bio-oxidation of propane to acetone using methane-oxidizing Methylomonas sp DH-1Hur, Dong Hoon; Thu Thi Nguyen; Kim, Donghyuk, et alARTICLE657 Selective bio-oxidation of propane to acetone using methane-oxidizing Methylomonas sp DH-1
2017-05Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655Seo, Sang Woo; Gao, Ye; Kim, Donghyuk, et alARTICLE767 Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655
2017-04Elucidation of bacterial translation regulatory networksJeong, Yujin; Shin, Hyeonseok; Seo, Sang Woo, et alARTICLE669 Elucidation of bacterial translation regulatory networks

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