Systematic discovery of nonobvious human disease models through orthologous phenotypes
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- Systematic discovery of nonobvious human disease models through orthologous phenotypes
- McGary, Kriston L.; Park, Tae Joo; Woods, John O.; Cha, Hye Ji; Wallingford, John B.; Marcotte, Edward M.
- Angiogenesis; Bioinformatics; Evolution; Gene-phenotype associations; Homology
- Issue Date
- NATL ACAD SCIENCES
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v.107, no.14, pp.6544 - 6549
- Biologists have long usedmodel organisms to study human diseases, particularlywhen themodel bears a close resemblance to the disease. We present a method that quantitatively and systematically identifies nonobvious equivalences between mutant phenotypes in different species, based on overlapping sets of orthologous genes from human, mouse, yeast, worm, and plant (212,542 gene-phenotype associations). These orthologous phenotypes, or phenologs, predict unique genes associated with diseases. Our method suggests a yeast model for angiogenesis defects, a worm model for breast cancer, mouse models of autism, and a plant model for the neural crest defects associated with Waardenburg syndrome, among others. Using thesemodels, we show that SOX13 regulates angiogenesis, and that SEC23IP is a likely Waardenburg gene. Phenologs reveal functionally coherent, evolutionarily conserved gene networks - many predating the plant-animal divergence - capable of identifying candidate disease genes.
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