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Bhak, Jong
KOrean GenomIcs Center(KOGIC)
Research Interests
  • Geromics, genomics, bioinformatics, protein Engineering, OMICS

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MassNet: a functional annotation service for protein mass spectrometry data

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Title
MassNet: a functional annotation service for protein mass spectrometry data
Other Titles
MassNet: a functional annotation service for protein mass spectrometry data.
Author
Park, DaeuiKim, Byoung-ChulCho, Seong-WoongPark, Seong-JinChoi, Jong-SoonKim, Seung IlBhak, Jong HwaLee, Sunghoon
Keywords
MOLECULAR INTERACTION DATABASE; GENE ONTOLOGY; PROTEOMICS; INTERACTOME; PREDICTION; SEQUENCE; GENOMES; YEAST
Issue Date
2008-07
Publisher
OXFORD UNIV PRESS
Citation
NUCLEIC ACIDS RESEARCH, v.36, no.Web Server, pp.W491 - W495
Abstract
Although mass spectrometry has been frequently used to identify proteins, there are no web servers that provide comprehensive functional annotation of those identified proteins. It is necessary to provide such web service due to a rapid increase in the data. We, therefore, introduce MassNet, which provides (i) physico-chemical analysis information, (ii) KEGG pathway assignment (iii) Gene Ontology mapping and (iv) proteinprotein interaction (PPI) prediction for the data from MASCOT, Prospector and Profound. MassNet provides the prediction information for PPIs using both 3D structural interaction and experimental interaction deposited in PSIMAP, BIND, DIP, HPRD, IntAct, MINT, CYGD and BioGrid. The web service is freely available at http://massnet.kr or http://sequenceome.kobic.re.kr/MassNet/
URI
Go to Link
DOI
10.1093/nar/gkn241
ISSN
0305-1048
Appears in Collections:
BME_Journal Papers
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