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A global analysis of condition-specific transcription and microRNA regulation patterns in Human

Nam, Dougu

Conference Paper Issue Date2013 View4

ADGO 2.0: interpreting microarray data and list of genes using composite annotations File File

Chi, Sang-Mun , Kim, Jin , Kim, Seon-Young , Nam, Dougu

Article Issue Date2011-07 View7

ADGO: analysis of differentially expressed gene sets using composite GO annotation File

Nam, Dougu , Kim, Sang-Bae , Kim, Seon-Kyu , Yang, Sungjin , Kim, Seon-Young , Chu, In-Sun

Article Issue Date2006-09 View4

An efficient top-down search algorithm for learning Boolean networks of gene expression File

Nam, Dougu , Seo, Seunghyun , Kim, Sangsoo

Article Issue Date2006-10 View5

Analysis of group patterns in microarray data

Nam, Dougu

Conference Paper Issue Date2010 View3

Analysis of triangular motifs in protein interaction networks and their implications to protein ages and cancer genes File

Jeon, Hyeonseong , Kim, Suh-Ryung , Nam, Dougu , Yoo, Yun Joo

Article Issue Date2017-12 View6

Androgen-induced expression of DRP1 regulates mitochondrial metabolic reprogramming in prostate cancer File

Lee, Yu Geon , Nam, Yeji , Shin, Kyeong Jin , Yoon, Sora , Park, Weon Seo , Joung, Jae Young , Seo, Jeong Kon , Jang, Jinho , Lee, Semin , Nam, Dougu , et al

Article Issue Date2020-02 View11

Benchmarking integration of single-cell differential expression File File

Nguyen, Hai C. T. , Baik, Bukyung , Yoon, Sora , Park, Taesung , Nam, Dougu

Article Issue Date2023-03 View9

Benchmarking RNA-seq differential expression analysis methods using spike-in and simulation data File File

Baik, Bukyung , Yoon, Sora , Nam, Dougu

Article Issue Date2020-04 View4

Biclustering analysis of transcriptome big data analysis identifies condition-specific miRNA targets

Yoon, Sora , Nguyen, Hai C.T. , Nam, Dougu

Conference Paper Issue Date2019-09-07 View4

Biclustering analysis of transcriptome big data identifies cancer suppressing miRNAs

Nam, Dougu

Conference Paper Issue Date2018-12-03 View5

Biclustering analysis of transcriptome big data identifies condition-specific microRNA targets File File

Yoon, Sora , Nguyen, HCT , Jo, Woobeen , Kim, Jinhwan , Chi, Sang-Mun , Park, Jiyoung , Kim, Seon-Young , Nam, Dougu

Article Issue Date2019-05 View3

Biclustering Analysis of Transcriptomic Big Data Identifies Condition-specific microRNA targets

Yoon, Sora , Nguyen, Hai C. T. , Jo, Woobean , Kim, Jinhwan , Chi, Sang-Mun , Park, Jiyoung , Kim, Seon-Young , Nam, Dougu

Conference Paper Issue Date2019-05-05 View5

Biclustering Analysis of Transcriptomic Big Data Identifies Condition-specific microRNA targets

Yoon, Sora , Nguyen, Hai , Nam, Dougu

Conference Paper Issue Date2018-10-31 View4

Biclustering Analysis of Transcriptomic Big-Data Identifies Condition-specific miRNA targets

Yoon, Sora , Nguyen, Hai C. T. , Jo, Woobeen , Kim, Jinhwan , Chi, Sang-Mun , Park, Jiyoung , Kim, Seon-Young , Nam, Dougu

Conference Paper Issue Date2018-11-26 View3

Biclustering methods for mining context-specific regulatory networks from expression data

Nam, Dougu , Yun, Sora , Kim, Jin Hwan

Conference Paper Issue Date2014 View4

Biclustering-based identification of condition-specific regulatory networks

Nam, Dougu

Conference Paper Issue Date2015-10-22 View3

Biclustering-based identification of miRNA and transcription factor targets from compendium of gene expression data

Nam, Dougu

Conference Paper Issue Date2016-06-30 View5

Bioinformatics services for analyzing massive genomic datasets File File

Ko, Gunhwan , Kim, Pan-Gyu , Cho, Youngbum , Jeong, Seongmun , Kim, Jae-Yoon , Kim, Kyoung Hyoun , Lee, Ho-Yeon , Han, Jiyeon , Yu, Namhee , Ham, Seokjin , et al

Article Issue Date2020-03 View8

Classification of disease subtypes using ensemble machine learning methods

Nam, Dougu

Conference Paper Issue Date2012 View2

De-correlating expression in gene set analysis

남덕우

Conference Paper Issue Date2010 View4

De-correlating expression in gene-set analysis File

Nam, Dougu

Article Issue Date2010-09 View5

De-correlation analysis of gene-set expression patterns

Nam, Dougu

Conference Paper Issue Date2010 View3

Differential expression and enrichment analysis of RNA-seq data

Nam, Dougu

Conference Paper Issue Date2016-08-19 View2

Differential expression and pathway analysis of RNA-seq data

Nam, Dougu

Conference Paper Issue Date2015-04-30 View1

Differential expression, pathway, and network analysis of RNA-seq data

남덕우

Conference Paper Issue Date2017-10-31 View3

Diffusible Signaling Factor, a Quorum-Sensing Molecule, Interferes with and Is Toxic Towards Bdellovibrio bacteriovorus 109J File

Dwidar, Mohammed , Jang, Hyochan , Sangwan, Naseer , Mun, Wonsik , Im, Hansol , Yoon, Sora , Choi, Sooin , Nam, Dougu , Mitchell, Robert J.

Article Issue Date2021-02 View7

Effect of the absolute statistic on gene-sampling gene-set analysis methods File

Nam, Dougu

Article Issue Date2017-06 View3

Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2

Yoon, Sora , Nguyen, Hai , Nam, Dougu

Conference Paper Issue Date2018-04-21 View4

Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2 File File

Yoon, Sora , Nguyen, Hai C. T. , Yoo, Yun J , Kim, Jinhwan , Baik, Bukyung , Kim, Sounkou , Kim, Jin , Kim, Sangsoo , Nam, Dougu

Article Issue Date2018-06 View9

Ensemble learning of genetic networks from time-series expression data File

Nam, Dougu , Yoon, Sung Ho , Kim, Jihyun F.

Article Issue Date2007-12 View4

Gene dispersion is the key determinant of the read count bias in differential expression analysis of RNA-seq data File File

Yoon, Sora , Nam, Dougu

Article Issue Date2017-05 View3

Gene set based analysis of microarray

Nam, Dougu

Conference Paper Issue Date2010 View2

Gene-set approach for expression pattern analysis File

Nam, Dougu , Kim, Seon-Young

Article Issue Date2008-05 View5

GENERATION OF INDUCED HEPATIC STEM CELLS FROM FIBROBLASTS BY DEFINED FACTORS

Park, Myung Rae , Kim, Jeong Beom , Nam, Dougu , Lee, Hyunah , Park, Soo-Yong , Seo, Hong Dae , Son, Ji-Hoon

Conference Paper Issue Date2018-06-22 View13

Glucosylceramide synthase regulates adipo‐osteogenic differentiation through synergistic activation of PPARγ with GlcCer File

Jang, Hyun-Jun , Lim, Seyoung , Kim, Jung-Min , Yoon, Sora , Lee, Chae Young , Hwang, Hyeon-Jeong , Shim, Jeong Woo , Shin, Kyeong Jin , Kim, Hye Yun , Park, Kwang Il , et al

Article Issue Date2020-01 View15

Group pattern analysis of polymorphisms

Nam, Dougu

Conference Paper Issue Date2010 View3

GSA-SNP: a general approach for gene set analysis of polymorphisms File File

Nam, Dougu , Kim, Jin , Kim, Seon-Young , Kim, Sangsoo

Article Issue Date2010-07 View4

GScluster: Network-weighted gene-set clustering analysis File File

Yoon, Sora , Kim, Jinhwan , Kim, Seon-Kyu , Baik, Bukyung , Chi, Sang-Mun , Kim, Seon-Young , Nam, Dougu

Article Issue Date2019-05 View13

Hepatic MIR20B promotes nonalcoholic fatty liver disease by suppressing PPARA File

Lee, Yo Han , Jang, Hyun-Jun , Kim, Sounkou , Choi, Sun Sil , Khim, Keon Woo , Eom, Hye-Jin , Hyun, Jimin , Shin, Kyeong Jin , Chae, Young Chan , Kim, Hongtae , et al

Article Issue Date2021-12 View18

Identification of Escherichia coli biomarkers responsive to various lignin-hydrolysate compounds File

Lee, Siseon , Nam, Dougu , Jung, Joon Young , Oh, Min-Kyu , Sang, Byoung-In , Mitchell, Robert J.

Article Issue Date2012-06 View0

Identification of gene regulatory networks using biclustering method

Nam, Dougu

Conference Paper Issue Date2013 View3

Impacts of the accumulated extinction of endangered species on stream food webs File File

Lee, Minyoung , Kim, Yongeun , Nam, Dougu , Cho, Kijong

Article Issue Date2023-12 View14

Improving gene-set enrichment analysis of RNA-Seq data with small replicates File File

Yoon, Sora , Kim, Seon-Young , Nam, Dougu

Article Issue Date2016-11 View4

Increasing power of genome-wide association study: pathway and meta analysis (Keynote speech)

Nam, Dougu

Conference Paper Issue Date2018-08-30 View3

Increasing power of GWAS: pathway and meta-analysis

Nam, Dougu

Conference Paper Issue Date2019-12-11 View5

Indole negatively impacts predation by Bdellovibrio bacteriovorus and its release from the bdelloplast File

Dwidar, Mohammed , Nam, Dougu , Mitchell, Robert J.

Article Issue Date2015-04 View4

Interpretation of large-scale genome data using composite annotations

Nam, Dougu

Conference Paper Issue Date2011 View1

Memory and synaptic plasticity are impaired by dysregulated hippocampal O-GlcNAcylation File File

Yang, Yong Ryoul , Song, Seungju , Hwang, Hongsik , Jung, Jung Hoon , Kim, Su-Jeong , Yoon, Sora , Hur, Jin-Hoe , Park, Jae-Il , Lee, Cheol , Nam, Dougu , et al

Article Issue Date2017-04 View6

MicroRNA-29 Ameliorates Fibro-Inflammation and Insulin Resistance in HIF1a-Deficient Obese Adipose Tissue by Inhibiting Endotrophin Generation

Jo, Woobeen , Kim, Min , Oh, Jiyoung , Kim, Chu-Sook , Park, Chanho , Yoon, Sora , Lee, Changhu , Kim, Sahee , Nam, Dougu , Park, Jiyoung

Conference Paper Issue Date2022-08-09 View5

MicroRNA-29 ameliorates fibro-inflammation and insulin resistance in HIF1α deficient obese adipose tissue by inhibiting endotrophin generation

Jo, Woobeen , Kim, Min , Oh, Jiyoung , Kim, Chu-Sook , Park, Chanho , Yoon, Sora , Lee, Changhu , Kim, Sahee , Nam, Dougu , Park, Jiyoung

Conference Paper Issue Date2022-05-25 View3

MicroRNA-29 Ameliorates Fibro-Inflammation and Insulin Resistance in HIF1α-Deficient Obese Adipose Tissue by Inhibiting Endotrophin Generation File

Jo, Woobeen , Kim, Min , Oh, Jiyoung , Kim, Chu-Sook , Park, Chanho , Yoon, Sora , Lee, Changhu , Kim, Sahee , Nam, Dougu , Park, Jiyoung

Article Issue Date2022-08 View14

Mining condition-specific transcription and microRNA regulatory networks in Human

Nam, Dougu

Conference Paper Issue Date2013 View1

Mining context-specific transcription networks using composite genomic information

Nam, Dougu

Conference Paper Issue Date2013 View1

MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering File File

Kim, Eun-Youn , Kim, Seon-Young , Ashlock, Daniel , Nam, Dougu

Article Issue Date2009-08 View4

netGO: R-Shiny package for network-integrated pathway enrichment analysis File

Kim, Jinhwan , Yoon, Sora , Nam, Dougu

Article Issue Date2020-05 View13

OGA heterozygosity suppresses intestinal tumorigenesis in Apc min/+ mice File File

Yang, Yongryoul , Jang H.J. , Yoon, Sunyoung , Lee, Yonghwa , Nam, Dougu , Kim, I.S. , Lee, Heeseok , Kim, Hyun , Choi, Jang Hyun , Kang, Byoung Heon , et al

Article Issue Date2014-07 View12

On the effect of inter-gene correlation to the power of gene-set level analysis of genome-wide data

Nam, Dougu

Conference Paper Issue Date2013 View3

Performance Comparison of Two Gene Set Analysis Methods for Genome-wide Association Study Results: GSA-SNP vs i-GSEA4GWAS File

Kwon, Ji-sun , Kim, Jihye , Nam, Dougu , Kim, Sangsoo

Article Issue Date2012-09 View3

Powerful p-value combination methods to detect incomplete association File File

Yoon, Sora , Baik, Bukyung , Park, Taesung , Nam, Dougu

Article Issue Date2021-03 View8

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