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Nam, Dougu
Bioinformatics Lab
Research Interests
  • Gene network, pathway analysis, biclustering, disease classification

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ADGO 2.0: interpreting microarray data and list of genes using composite annotations

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dc.contributor.author Chi, Sang-Mun ko
dc.contributor.author Kim, Jin ko
dc.contributor.author Kim, Seon-Young ko
dc.contributor.author Nam, Dougu ko
dc.date.available 2014-04-09T08:35:48Z -
dc.date.created 2013-06-07 ko
dc.date.issued 2011-07 ko
dc.identifier.citation NUCLEIC ACIDS RESEARCH, v.39, pp.W302 - W306 ko
dc.identifier.issn 0305-1048 ko
dc.identifier.uri https://scholarworks.unist.ac.kr/handle/201301/2747 -
dc.description.abstract ADGO 2.0 is a web-based tool that provides composite interpretations for microarray data comparing two sample groups as well as lists of genes from diverse sources of biological information. Some other tools also incorporate composite annotations solely for interpreting lists of genes but usually provide highly redundant information. This new version has the following additional features: first, it provides multiple gene set analysis methods for microarray inputs as well as enrichment analyses for lists of genes. Second, it screens redundant composite annotations when generating and prioritizing them. Third, it incorporates union and subtracted sets as well as intersection sets. Lastly, users can upload their own gene sets (e.g. predicted miRNA targets) to generate and analyze new composite sets. The first two features are unique to ADGO 2.0. Using our tool, we demonstrate analyses of a microarray dataset and a list of genes for T-cell differentiation. The new ADGO is available at http://www.btool.org/ADGO2. ko
dc.description.statementofresponsibility open -
dc.language 영어 ko
dc.publisher OXFORD UNIV PRESS ko
dc.title ADGO 2.0: interpreting microarray data and list of genes using composite annotations ko
dc.type ARTICLE ko
dc.identifier.scopusid 2-s2.0-79960021204 ko
dc.identifier.wosid 000292325300049 ko
dc.type.rims ART ko
dc.description.wostc 4 *
dc.description.scopustc 5 *
dc.date.tcdate 2015-02-28 *
dc.date.scptcdate 2014-08-27 *
dc.identifier.doi 10.1093/nar/gkr392 ko
dc.identifier.url http://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&scp=79960021204 ko
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