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Bhak, Jong
KOrean GenomIcs Center(KOGIC)
Research Interests
  • Geromics, genomics, bioinformatics, protein Engineering, OMICS

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Parameter selection of pocket extraction algorithm using interaction interface

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Title
Parameter selection of pocket extraction algorithm using interaction interface
Other Titles
Parameter selection of pocket extraction algorithm using interaction interface
Author
Kim, Chong-MinWon, Chung-InRyu, JoonghyunCho, Cheol-HyungBhak, Jong HwaKim, Deok-Soo
Keywords
Interaction interface; Pocket; Protein; Protein interaction; Voronoi diagram
Issue Date
2006-09
Publisher
ZHEJIANG UNIV
Citation
JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE A, v.7, no.9, pp.1492 - 1499
Abstract
Pockets in proteins have been known to be very important for the life process. There have been several studies in the past to automatically extract the pockets from the structure information of known proteins. However, it is difficult to find a study comparing the precision of the extracted pockets from known pockets on the protein. We propose an algorithm for extracting pockets from structure data of proteins and analyze the quality of the algorithm by comparing the extracted pockets with some known pockets. These results can be used to set the parameter values of the pocket extraction algorithm for getting better results
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DOI
10.1631/jzus.2006.A1492
ISSN
1673-565X
Appears in Collections:
BME_Journal Papers
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