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An Optimized Method for Reconstruction of Transcriptional Regulatory Networks in Bacteria Using ChIP-exo and RNA-seq Datasets File

Jang, Minchang , Park, Joon Young , Lee, Gayeon , Kim, Donghyuk

Article Issue Date2024-12 View53

Biosensor-guided evolution boosts itaconic acid production, unveiling unique insights into the stringent response File

Moon, Jo Hyun , Woo, Jihoon , Park, Joon Young , Noh, Myung Hyun , Kim, Donghyuk , Jung, Gyoo Yeol

Article Issue Date2025-06 View35

Blanket antimicrobial resistance gene database with structural information, BOARDS, provides insights on historical landscape of resistance prevalence and effects of mutations in enzyme structure File File

Ko, Seyoung , Kim, Jaehyung , Lim, Jaewon , Lee, Sang-Mok , Park, Joon Young , Woo, Jihoon , Scott-Nevros, Zoe K. , Kim, Jong R. , Yoon, Hyunjin , Kim, Donghyuk

Article Issue Date2024-01 View71

ChEAP: ChIP-exo analysis pipeline and the investigation of Escherichia coli RpoN protein-DNA interactions File File

Bang, Ina , Nong, Linh Khanh , Park, Joon Young , Le, Hoa Thi , Lee, Sang-Mok , Kim, Donghyuk

Article Issue Date2023-01 View67

Comprehensive Genome Analysis on the Novel Species Sphingomonas panacis DCY99(T) Reveals Insights into Iron Tolerance of Ginseng File File

Kim, Yeon-Ju , Park, Joon Young , Balusamy, Sri Renukadevi , Huo, Yue , Nong, Linh Khanh , Le, Hoa Thi , Yang, Deok Chun , Kim, Donghyuk

Article Issue Date2020-03 View88

Deciphering Bacterial Transcriptional Regulatory Networks Through an Optimized ChIP-exo Method and Machine Learning-Based Transcriptome Analysis File

Park, Joon Young

Thesis Issue Date2025-02 View28

Deep learning for NAD/NADP cofactor prediction and engineering using transformer attention analysis in enzymes File

Kim, Jaehyung , Woo, Jihoon , Park, Joon Young , Kim, Kyung-Jin , Kim, Donghyuk

Article Issue Date2025-01 View45

Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling File

Bang, Ina , Lee, Sang-Mok , Park, Seojoung , Park, Joon Young , Nong, Linh Khanh , Gao, Ye , Palsson, Bernhard O , Kim, Donghyuk

Article Issue Date2023-03 View65

Double-sided van der Waals epitaxy of topological insulators across an atomically thin membrane File

Park, Joon Young , Shin, Young Jae , Shin, Jeacheol , Kim, Jehyun , Jo, Janghyun , Yoo, Hyobin , Haei, Danial , Hyun, Chohee , Yun, Jiyoung , Huber, Robert M. , et al

Article Issue Date2025-03 View37

Draft genome sequence of lytic bacteriophage KP1 infecting bacterial pathogen Klebsiella pneumoniae File

Kim, Youngju , Bang, Ina , Yeon, Young Eun , Park, Joon Young , Han, Beom Ku , Kim, Hyunil , Kim, Donghyuk

Article Issue Date2018-06 View46

Experimental promoter identification of a foodborne pathogen Salmonella enterica subsp. enterica serovar Typhimurium with near single base-pair resolution File

Lee, Sang-Mok , Le, Hoa Thi , Taizhanova, Assiya , Nong, Linh Khanh , Park, Joon Young , Lee, Eun-Jin , Palsson, Bernhard O. , Kim, Donghyuk

Article Issue Date2024-01 View83

Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol File

Nguyen, Anh Duc , Park, Joon Young , Hwang, In Yeub , Hamilton, Richard , Kalyuzhnaya, Marina G. , Kim, Donghyuk , Lee, Eun Yeol

Article Issue Date2020-01 View44

Genome-wide identification of DNA-protein interaction to reconstruct bacterial transcription regulatory network File

Park, Joon Young , Rimal, Hemraj , Bang, Ina , Nong, Linh Khanh , Kim, Donghyuk

Article Issue Date2020-12 View50

Individually addressable, high-density vertical nanotube Schottky diode crossbar array File

Tchoe, Youngbin , Song, Minho S. , Kim, Heehun , Baek, Hyeonjun , Park, Joon Young , Oh, Hongseok , Lee, Keundong , Chung, Kyungmin , Hyun, Jerome K. , Yi, Gyu-Chul

Article Issue Date2020-10 View53

Qualitative analysis of growth mechanism of polycrystalline InAs thin films grown by molecular beam epitaxy File

Agrawal, Arpana , Tchoe, Youngbin , Kim, Heehun , Park, Joon Young

Article Issue Date2018-12 View63

Rapid identification of the antigenic determinant of PLC-γ1 recognized by a monoclonal antibody using positional scanning synthetic peptide libraries

Suh, Pann-Ghill , Seo, Jeong Kon , Park, Joon Young , Kim, In Jung , Bae, Kyung Sook , Chae, Chi Bom , Ryu, Sung Ho

Conference Paper Issue Date1993-10-21 View38

Sphericity of a protein via the beta-complex File

Kim, Deok-Soo , Kim, Jae-Kwan , Won, Chung-In , Kim, Chong-Min , Park, Joon Young , Bhak, Jong Hwa

Article Issue Date2010-04 View125

Unveiling the novel regulatory roles of RpoD-family sigma factors in Salmonella Typhimurium heat shock response through systems biology approaches File

Park, Joon Young , Jang, Minchang , Lee, Sang-Mok , Woo, Jihoon , Lee, Eun-Jin , Kim, Donghyuk

Article Issue Date2024-10 View49

Use of acetate as substrate for sustainable production of homoserine and threonine by Escherichia coli W3110: A modular metabolic engineering approach File

Vo, Toan Minh , Park, Joon Young , Kim, Donghyuk , Park, Sunghoon

Article Issue Date2024-07 View77

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