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Cellular responses to reactive oxygen species are predicted from molecular mechanisms File

Yang, Laurence , Mih, Nathan , Anand, Amitesh , Park, Joon Ho , Tan, Justin , Yurkovich, James T. , Monk, Jonathan M. , Lloyd, Colton J. , Sandberg, Troy E. , Seo, Sang Woo , et al

Article Issue Date2019-07 View15
Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling File

Bang, Ina , Lee, Sang-Mok , Park, Seojoung , Park, Joon Young , Nong, Linh Khanh , Gao, Ye , Palsson, Bernhard O , Kim, Donghyuk

Article Issue Date2023-03 View17
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities File

Fang, Xin , Sastry, Anand , Mih, Nathan , Kim, Donghyuk , Tan, Justin , Yurkovich, James T. , Lloyd, Colton J. , Gao, Ye , Yang, Laurence , Palsson, Bernhard O.

Article Issue Date2017-09 View19
proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms File File

Decker, Katherine T. , Gao, Ye , Rychel, Kevin , Al Bulushi, Tahani , Chauhan, Siddharth M. , Kim, Donghyuk , Cho, Byung-Kwan , Palsson, Bernhard O.

Article Issue Date2022-01 View16
Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655 File

Seo, Sang Woo , Gao, Ye , Kim, Donghyuk , Szubin, Richard , Yang, Jina , Cho, Byung-Kwan , Palsson, Bernhard O.

Article Issue Date2017-05 View26
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655 File

Gao, Ye , Yurkovich, James T. , Seo, Sang Woo , Kabimoldayev, Ilyas , Draeger, Andreas , Chen, Ke , Sastry, Anand V. , Fang, Xin , Mih, Nathan , Yang, Laurence , et al

Article Issue Date2018-11 View17
Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP File

Kim, Donghyuk , Seo, Sang Woo , Gao, Ye , Nam, Hojung , Guzman, Gabriela I. , Cho, Byung-Kwan , Palsson, Bernhard O.

Article Issue Date2018-04 View20
The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets File File

Gao, Ye , Bang, Ina , Seif, Yara , Kim, Donghyuk , Palsson, Bernhard O.

Article Issue Date2023-05 View33
The Escherichia coli transcriptome mostly consists of independently regulated modules File File

Sastry, Anand, V , Gao, Ye , Szubin, Richard , Hefner, Ying , Xu, Sibei , Kim, Donghyuk , Choudhary, Kumari Sonal , Yang, Laurence , King, Zachary A. , Palsson, Bernhard O.

Article Issue Date2019-12 View27
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