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Showing results 1 to 8 of 8

Issue DateTitleAuthor(s)TypeView
2019-07Cellular responses to reactive oxygen species are predicted from molecular mechanismsYang, Laurence; Mih, Nathan; Anand, Amitesh; Park, Joon Ho; Tan, Justin; Yurkovich, James T.; Monk, Jonathan M.; Lloyd, Colton J.; Sandberg, Troy E.; Seo, Sang Woo; Kim, Donghyuk; Sastry, Anand, V; Phaneuf, Patrick; Gao, Ye; Broddrick, Jared T.; Chen, Ke; Heckmann, David; Szubin, Richard; Hefner, Ying; Feist, Adam M.; Palsson, Bernhard O.ARTICLE583
2023-03Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak callingBang, Ina; Lee, Sang-Mok; Park, Seojoung; Park, Joon Young; Nong, Linh Khanh; Gao, Ye; Palsson, Bernhard O; Kim, DonghyukARTICLE287
2017-09Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activitiesFang, Xin; Sastry, Anand; Mih, Nathan; Kim, Donghyuk; Tan, Justin; Yurkovich, James T.; Lloyd, Colton J.; Gao, Ye; Yang, Laurence; Palsson, Bernhard O.ARTICLE680
2022-01proChIPdb: a chromatin immunoprecipitation database for prokaryotic organismsDecker, Katherine T.; Gao, Ye; Rychel, Kevin; Al Bulushi, Tahani; Chauhan, Siddharth M.; Kim, Donghyuk; Cho, Byung-Kwan; Palsson, Bernhard O.ARTICLE450
2017-05Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655Seo, Sang Woo; Gao, Ye; Kim, Donghyuk; Szubin, Richard; Yang, Jina; Cho, Byung-Kwan; Palsson, Bernhard O.ARTICLE767
2018-11Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655Gao, Ye; Yurkovich, James T.; Seo, Sang Woo; Kabimoldayev, Ilyas; Draeger, Andreas; Chen, Ke; Sastry, Anand V.; Fang, Xin; Mih, Nathan; Yang, Laurence; Eichner, Johannes; Cho, Byung-Kwan; Kim, Donghyuk; Palsson, Bernhard O.ARTICLE635
2018-04Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRPKim, Donghyuk; Seo, Sang Woo; Gao, Ye; Nam, Hojung; Guzman, Gabriela I.; Cho, Byung-Kwan; Palsson, Bernhard O.ARTICLE764
2019-12The Escherichia coli transcriptome mostly consists of independently regulated modulesSastry, Anand, V; Gao, Ye; Szubin, Richard; Hefner, Ying; Xu, Sibei; Kim, Donghyuk; Choudhary, Kumari Sonal; Yang, Laurence; King, Zachary A.; Palsson, Bernhard O.ARTICLE541
Showing results 1 to 8 of 8