Full metadata record
DC Field | Value | Language |
---|---|---|
dc.citation.number | 9 | - |
dc.citation.startPage | evac132 | - |
dc.citation.title | GENOME BIOLOGY AND EVOLUTION | - |
dc.citation.volume | 14 | - |
dc.contributor.author | Kim, Jungeun | - |
dc.contributor.author | Choi, Jae Pil | - |
dc.contributor.author | Kim, Min Sun | - |
dc.contributor.author | Jo, Yejin | - |
dc.contributor.author | Min, Won Gi | - |
dc.contributor.author | Woo, Seonock | - |
dc.contributor.author | Yum, Seungshic | - |
dc.contributor.author | Bhak, Jong | - |
dc.date.accessioned | 2023-12-21T13:41:04Z | - |
dc.date.available | 2023-12-21T13:41:04Z | - |
dc.date.created | 2022-09-29 | - |
dc.date.issued | 2022-09 | - |
dc.description.abstract | Stony corals often harbor intracellular photosynthetic dinoflagellate algae that receive dissolved inorganic nutrients. However, Dendrophyllia cribrosa is a nonsymbiotic stony coral distributed in the western Pacific. We assembled a chromosome-level D. cribrosa genome using PacBio and Hi-C technologies. The final assembly was 625 Mb, distributed on 14 chromosomes, and contained 30,493 protein-coding genes. The Benchmarking Universal Single-Copy Orthologs analysis revealed a percentage of 96.8 of the metazoan genome. A comparative phylogenetic analysis revealed that D. cribrosa, which lacks symbionts, evolved to acquire cellular energy by expanding genes related to acyl-CoA metabolism and carbohydrate transporters. This species also has expanded immune-related genes involved in the receptor protein tyrosine kinase signaling pathway. In addition, we observed a specific expansion of calcification genes, such as coral acid-rich proteins and carbonic anhydrase, in D. cribrosa. This high-quality reference genome and comparative analysis provides insights into the ecology and evolution of nonsymbiotic stony corals. | - |
dc.identifier.bibliographicCitation | GENOME BIOLOGY AND EVOLUTION, v.14, no.9, pp.evac132 | - |
dc.identifier.doi | 10.1093/gbe/evac132 | - |
dc.identifier.issn | 1759-6653 | - |
dc.identifier.scopusid | 2-s2.0-85138446333 | - |
dc.identifier.uri | https://scholarworks.unist.ac.kr/handle/201301/60405 | - |
dc.identifier.wosid | 000851626700001 | - |
dc.language | 영어 | - |
dc.publisher | OXFORD UNIV PRESS | - |
dc.title | Comparative Genome and Evolution Analyses of an Endangered Stony Coral Species Dendrophyllia cribrosa Near Dokdo Islands in the East Sea | - |
dc.type | Article | - |
dc.description.isOpenAccess | TRUE | - |
dc.relation.journalWebOfScienceCategory | Evolutionary Biology; Genetics & Heredity | - |
dc.relation.journalResearchArea | Evolutionary Biology; Genetics & Heredity | - |
dc.type.docType | Article | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
dc.subject.keywordAuthor | Dendrophyllia cribrosa | - |
dc.subject.keywordAuthor | comparative genome | - |
dc.subject.keywordAuthor | comparative evolution | - |
dc.subject.keywordAuthor | stony coral | - |
dc.subject.keywordAuthor | chromosome-level assembly | - |
dc.subject.keywordPlus | SEQUENCE | - |
dc.subject.keywordPlus | ALIGNMENT | - |
dc.subject.keywordPlus | RNA | - |
dc.subject.keywordPlus | ANNOTATION | - |
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