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Bhak, Jong
KOrean GenomIcs Center(KOGIC)
Research Interests
  • Geromics, genomics, bioinformatics, protein Engineering, OMICS

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PDBWiki: added value through community annotation of the Protein Data Bank

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dc.contributor.author Stehr, Henning ko
dc.contributor.author Duarte, Jose M. ko
dc.contributor.author Lappe, Michael ko
dc.contributor.author Bhak, Jong Hwa ko
dc.contributor.author Bolser, Dan M. ko
dc.date.available 2015-09-04T07:54:48Z -
dc.date.created 2015-09-04 ko
dc.date.issued 2010-07 -
dc.identifier.citation DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, v.2010, no., pp.baq009 - ko
dc.identifier.issn 1758-0463 ko
dc.identifier.uri https://scholarworks.unist.ac.kr/handle/201301/16663 -
dc.identifier.uri http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911844/ ko
dc.description.abstract The success of community projects such as Wikipedia has recently prompted a discussion about the applicability of such tools in the life sciences. Currently, there are several such 'science-wikis' that aim to collect specialist knowledge from the community into centralized resources. However, there is no consensus about how to achieve this goal. For example, it is not clear how to best integrate data from established, centralized databases with that provided by 'community annotation'. We created PDBWiki, a scientific wiki for the community annotation of protein structures. The wiki consists of one structured page for each entry in the the Protein Data Bank (PDB) and allows the user to attach categorized comments to the entries. Additionally, each page includes a user editable list of cross-references to external resources. As in a database, it is possible to produce tabular reports and 'structure galleries' based on user-defined queries or lists of entries. PDBWiki runs in parallel to the PDB, separating original database content from user annotations. PDBWiki demonstrates how collaboration features can be integrated with primary data from a biological database. It can be used as a system for better understanding how to capture community knowledge in the biological sciences. For users of the PDB, PDBWiki provides a bug-tracker, discussion forum and community annotation system. To date, user participation has been modest, but is increasing. The user editable cross-references section has proven popular, with the number of linked resources more than doubling from 17 originally to 39 today. Database URL: http://www.pdbwiki.or ko
dc.description.statementofresponsibility open -
dc.language ENG ko
dc.publisher OXFORD UNIV PRESS ko
dc.subject computer interface ko
dc.subject Internet ko
dc.subject protein database ko
dc.subject structural homology ko
dc.title PDBWiki: added value through community annotation of the Protein Data Bank ko
dc.type ARTICLE ko
dc.identifier.scopusid 2-s2.0-77956545718 ko
dc.identifier.wosid 000208191400012 ko
dc.type.rims ART ko
dc.description.wostc 6 *
dc.description.scopustc 10 *
dc.date.tcdate 2015-12-28 *
dc.date.scptcdate 2015-11-04 *
dc.identifier.doi 10.1093/database/baq009 ko
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