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Bhak, Jong
KOrean GenomIcs Center(KOGIC)
Research Interests
  • Geromics, genomics, bioinformatics, protein Engineering, OMICS


Pocket extraction on proteins via the Voronoi diagram of spheres

DC Field Value Language Kim, Donguk ko Cho, Cheol-Hyung ko Cho, Youngsong ko Ryu, Joonghyun ko Bhak, Jong Hwa ko Kim, Deok-Soo ko 2015-08-03T00:14:20Z - 2015-07-31 ko 2008-04 -
dc.identifier.citation JOURNAL OF MOLECULAR GRAPHICS & MODELLING, v.26, no.7, pp.1104 - 1112 ko
dc.identifier.issn 1093-3263 ko
dc.identifier.uri -
dc.identifier.uri ko
dc.description.abstract Proteins consist of atoms. Given a protein, the automatic recognition of depressed regions, called pockets, on the surface of proteins is important for protein-ligand docking and facilitates fast development of new drugs. Recently, computational approaches have emerged for recognizing pockets from the geometrical point of view. Presented in this paper is a geometric method for the pocket recognition which is based on the Voronoi diagram for atoms. Given a Voronoi diagram, the proposed algorithm transforms the atomic structure to meshes which contain the information of the proximity among atoms, and then recognizes depressions on the surface of a protein using the meshes. (c) 2007 Elsevier Inc. All rights reserved ko
dc.description.statementofresponsibility close -
dc.language ENG ko
dc.publisher ELSEVIER SCIENCE INC ko
dc.subject Voronoi diagram of atoms ko
dc.subject protein ko
dc.subject pocket ko
dc.subject binding site ko
dc.subject docking ko
dc.subject protein surface ko
dc.subject blending mesh ko
dc.title Pocket extraction on proteins via the Voronoi diagram of spheres ko
dc.title.alternative Pocket extraction on proteins via the Voronoi diagram of spheres. ko
dc.type ARTICLE ko
dc.identifier.scopusid 2-s2.0-40649097302 ko
dc.identifier.wosid 000254721700008 ko
dc.type.rims ART ko
dc.description.wostc 19 *
dc.description.scopustc 21 * 2015-12-28 * 2015-11-04 *
dc.identifier.doi 10.1016/j.jmgm.2007.10.002 ko
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