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Bhak, Jong
KOrean GenomIcs Center(KOGIC)
Research Interests
  • Geromics, genomics, bioinformatics, protein Engineering, OMICS

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PSIbase: A database of Protein Structural Interactome map (PSIMAP)

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Title
PSIbase: A database of Protein Structural Interactome map (PSIMAP)
Other Titles
PSIbase: a database of Protein Structural Interactome map (PSIMAP)
Author
Gong, SungsamYoon, GiseokJang, InsooBolser, DanDafas, PanosSchroeder, MichaelChoi, HansolCho, YoobokHan, KyungsookLee, SunghoonChoi, HwanhoLappe, MichaelHolm, LiisaKim, SangsooOh, DonghoonBhak, Jong Hwa
Keywords
SEQUENCES; PDB
Issue Date
2005-05
Publisher
OXFORD UNIV PRESS
Citation
BIOINFORMATICS, v.21, no.10, pp.2541 - 2543
Abstract
Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain-domain and protein-protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences
URI
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DOI
10.1093/bioinformatics/bti366
ISSN
1367-4803
Appears in Collections:
BME_Journal Papers
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Bioinformatics-2005-Gong-2541-3.pdf Download

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