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Bhak, Jong
KOrean GenomIcs Center(KOGIC)
Research Interests
  • Geromics, genomics, bioinformatics, protein Engineering, OMICS


Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis

DC Field Value Language Kim, Deok-Soo ko Cho, Youngsong ko Kim, Donguk ko Kim, Sangsoo ko Bhak, Jong Hwa ko Lee, Sung-Hoon ko 2015-07-31T06:12:31Z - 2015-07-31 ko 2005-06 -
dc.identifier.citation JAPAN JOURNAL OF INDUSTRIAL AND APPLIED MATHEMATICS, v.22, no.2, pp.251 - 265 ko
dc.identifier.issn 0916-7005 ko
dc.identifier.uri -
dc.identifier.uri ko
dc.description.abstract Despite its many important applications in various disciplines in sciences and engineering, the Euclidean Voronoi diagram for spheres in 3D space has not been studied as much as it deserves. In this paper, we present an algorithm to compute a Euclidean Voronoi diagram for 3D spheres and show how the diagram can be used in the analysis of protein structures. Given an initial Voronoi vertex, the presented edge-tracing algorithm follows Voronoi edges until the construction is completed in O(mn) time in the worst-case, where m and n are the numbers of edges and spheres, respectively. Once a Voronoi diagram for 3D atoms of a protein is computed, it is shown that the diagram can be used to efficiently and precisely analyze the spatial structure of the protein. It turns out that this capability of a Voronoi diagram can be crucial to solving several important problems remaining to be solved in structural biology ko
dc.description.statementofresponsibility close -
dc.language ENG ko
dc.publisher KINOKUNIYA CO LTD ko
dc.subject Euclidean Voronoi diagrams ko
dc.subject edge-tracing ko
dc.subject protein structure ko
dc.title Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis ko
dc.title.alternative Euclidean Voronoi diagrams of 3D sphereds and applications to protein structure analysis. ko
dc.type ARTICLE ko
dc.identifier.scopusid 2-s2.0-22544461060 ko
dc.identifier.wosid 000230699000008 ko
dc.type.rims ART ko
dc.description.wostc 17 *
dc.description.scopustc 21 * 2015-12-28 * 2015-11-04 *
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