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Bhak, Jong
KOrean GenomIcs Center(KOGIC)
Research Interests
  • Geromics, genomics, bioinformatics, protein Engineering, OMICS


BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources

DC Field Value Language Lim, Jeongheui ko Kim, Sang-Yoon ko Kim, Sungmin ko Eo, Hae-Seok ko Kim, Chang-Bae ko Paek, Woon Kee ko Kim, Won ko Bhak, Jong Hwa ko 2015-07-31T06:11:39Z - 2015-07-31 ko 2009-09 -
dc.identifier.citation BMC GENOMICS, v.10, no.SUPPL. 3, pp.S8 - ko
dc.identifier.issn 1471-2164 ko
dc.identifier.uri -
dc.identifier.uri ko
dc.description.abstract Background: DNA barcoding provides a rapid, accurate, and standardized method for species-level identification using short DNA sequences. Such a standardized identification method is useful for mapping all the species on Earth, particularly when DNA sequencing technology is cheaply available. There are many nations in Asia with many biodiversity resources that need to be mapped and registered in databases. Results: We have built a general DNA barcode data processing system, BioBarcode, with open source software - which is a general purpose database and server. It uses mySQL RDBMS 5.0, BLAST2, and Apache httpd server. An exemplary database of BioBarcode has around 11,300 specimen entries (including GenBank data) and registers the biological species to map their genetic relationships. The BioBarcode database contains a chromatogram viewer which improves the performance in DNA sequence analyses. Conclusion: Asia has a very high degree of biodiversity and the BioBarcode database server system aims to provide an efficient bioinformatics protocol that can be freely used by Asian researchers and research organizations interested in DNA barcoding. The BioBarcode promotes the rapid acquisition of biological species DNA sequence data that meet global standards by providing specialized services, and provides useful tools that will make barcoding cheaper and faster in the biodiversity community such as standardization, depository, management, and analysis of DNA barcode data. The system can be downloaded upon request, and an exemplary server has been constructed with which to build an Asian biodiversity system ko
dc.description.statementofresponsibility close -
dc.language ENG ko
dc.publisher BIOMED CENTRAL LTD ko
dc.subject IDENTIFICATION ko
dc.subject CONSERVATION ko
dc.subject LEPIDOPTERA ko
dc.subject BIOLOGY ko
dc.subject DIET ko
dc.title BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources ko
dc.title.alternative BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources ko
dc.type ARTICLE ko
dc.identifier.scopusid 2-s2.0-71549167314 ko
dc.identifier.wosid 000272356000008 ko
dc.type.rims ART ko
dc.description.wostc 6 *
dc.description.scopustc 7 * 2015-12-28 * 2015-11-04 *
dc.identifier.doi 10.1186/1471-2164-10-S3-S8 ko
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