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ChEAP: ChIP-exo analysis pipeline and the investigation of Escherichia coli RpoN protein-DNA interactions File File

Bang, Ina , Nong, Linh Khanh , Park, Joon Young , Le, Hoa Thi , Lee, Sang-Mok , Kim, Donghyuk

Article Issue Date2023-01 View108
Deciphering Bacterial Transcriptional Regulatory Networks Through an Optimized ChIP-exo Method and Machine Learning-Based Transcriptome Analysis File

Park, Joon Young

Thesis Issue Date2025-02 View80
Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling File

Bang, Ina , Lee, Sang-Mok , Park, Seojoung , Park, Joon Young , Nong, Linh Khanh , Gao, Ye , Palsson, Bernhard O , Kim, Donghyuk

Article Issue Date2023-03 View145
Experimental promoter identification of a foodborne pathogen Salmonella enterica subsp. enterica serovar Typhimurium with near single base-pair resolution File

Lee, Sang-Mok , Le, Hoa Thi , Taizhanova, Assiya , Nong, Linh Khanh , Park, Joon Young , Lee, Eun-Jin , Palsson, Bernhard O. , Kim, Donghyuk

Article Issue Date2024-01 View146
Genome-wide identification of DNA-protein interaction to reconstruct bacterial transcription regulatory network File

Park, Joon Young , Rimal, Hemraj , Bang, Ina , Nong, Linh Khanh , Kim, Donghyuk

Article Issue Date2020-12 View121
Redefining HexR regulatory landscape in Pseudomonas putida KT2440 through integrative systems biology File

Nong, Linh Khanh , Sathesh-Prabu, Chandran , Lee, Sung Kuk , Kim, Donghyuk

Article Issue Date2026-03 View16
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