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Showing results 1 to 18 of 18

Issue DateTitleAuthor(s)TypeView
2019-07Cellular responses to reactive oxygen species are predicted from molecular mechanismsYang, Laurence; Mih, Nathan; Anand, Amitesh; Park, Joon Ho; Tan, Justin; Yurkovich, James T.; Monk, Jonathan M.; Lloyd, Colton J.; Sandberg, Troy E.; Seo, Sang Woo; Kim, Donghyuk; Sastry, Anand, V; Phaneuf, Patrick; Gao, Ye; Broddrick, Jared T.; Chen, Ke; Heckmann, David; Szubin, Richard; Hefner, Ying; Feist, Adam M.; Palsson, Bernhard O.ARTICLE90
2018-10Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflowBrunk, Elizabeth; Chang, Roger L.; Xia, Jing; Hefzi, Hooman; Yurkovich, James T.; Kim, Donghyuk; Buckmiller, Evan; Wang, Harris H.; Cho, Byung-Kwan; Yang, Chen; Palsson, Bernhard O.; Church, George M.; Lewis, Nathan E.ARTICLE179
2012-08Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site ProfilingKim, Donghyuk; Hong, Jay Sung-Joong; Qiu, Yu; Nagarajan, Harish; Seo, Joo-Hyun; Cho, Byung-Kwan; Tsai, Shih-Feng; Palsson, Bernhard O.ARTICLE209
2014-09Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coliSeo, Sang Woo; Kim, Donghyuk; Latif, Haythem; O'Brien, Edward J.; Szubin, Richard; Palsson, Bernhard O.ARTICLE252
2015-08Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coliSeo, Sang Woo; Kim, Donghyuk; O'Brien, Edward J.; Szubin, Richard; Palsson, Bernhard O.ARTICLE241
2014-01Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional statesCho, Byung-Kwan; Kim, Donghyuk; Knight, Eric M.; Zengler, Karsten; Palsson, Bernhard O.ARTICLE177
2015-08Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655Seo, Sang Woo; Kim, Donghyuk; Szubin, Richard; Palsson, Bernhard O.ARTICLE160
2017-09Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activitiesFang, Xin; Sastry, Anand; Mih, Nathan; Kim, Donghyuk; Tan, Justin; Yurkovich, James T.; Lloyd, Colton J.; Gao, Ye; Yang, Laurence; Palsson, Bernhard O.ARTICLE204
2016-10Multi-omic data integration enables discovery of hidden biological regularitiesEbrahim, Ali; Brunk, Elizabeth; Tan, Justin; O'Brien, Edward J.; Kim, Donghyuk; Szubin, Richard; Lerman, Joshua A.; Lechner, Anna; Sastry, Anand; Bordbar, Aarash; Feist, Adam M.; Palsson, Bernhard O.ARTICLE177
2012-11Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory featuresSeo, Joo-Hyun; Hong, Jay Sung-Joong; Kim, Donghyuk; Cho, Byung-Kwan; Huang, Tzu-Wen; Tsai, Shih-Feng; Palsson, Bernhard O.; Charusanti, PepARTICLE180
2012-08Network Context and Selection in the Evolution to Enzyme SpecificityNam, Hojung; Lewis, Nathan E.; Lerman, Joshua A.; Lee, Dae-Hee; Chang, Roger L.; Kim, Donghyuk; Palsson, Bernhard O.ARTICLE210
2017-05Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655Seo, Sang Woo; Gao, Ye; Kim, Donghyuk; Szubin, Richard; Yang, Jina; Cho, Byung-Kwan; Palsson, Bernhard O.ARTICLE241
2013-06Structural Systems Biology Evaluation of Metabolic Thermotolerance in Escherichia coliChang, Roger L.; Andrews, Kathleen; Kim, Donghyuk; Li, Zhanwen; Godzik, Adam; Palsson, Bernhard O.ARTICLE198
2018-11Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655Gao, Ye; Yurkovich, James T.; Seo, Sang Woo; Kabimoldayev, Ilyas; Draeger, Andreas; Chen, Ke; Sastry, Anand V.; Fang, Xin; Mih, Nathan; Yang, Laurence; Eichner, Johannes; Cho, Byung-Kwan; Kim, Donghyuk; Palsson, Bernhard O.ARTICLE178
2018-04Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRPKim, Donghyuk; Seo, Sang Woo; Gao, Ye; Nam, Hojung; Guzman, Gabriela I.; Cho, Byung-Kwan; Palsson, Bernhard O.ARTICLE246
2015-08Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput dataYang, Laurence; Tan, Justin; O'Brien, Edward J.; Monk, Jonathan M.; Kim, Donghyuk; Li, Howard J.; Charusanti, Pep; Ebrahim, Ali; Lloyd, Colton J.; Yurkovich, James T.; Du, Bin; Draeger, Andreas; Thomas, Alex; Sun, Yuekai; Saunders, Michael A.; Palsson, Bernhard O.ARTICLE196
2019-12The Escherichia coli transcriptome mostly consists of independently regulated modulesSastry, Anand, V; Gao, Ye; Szubin, Richard; Hefner, Ying; Xu, Sibei; Kim, Donghyuk; Choudhary, Kumari Sonal; Yang, Laurence; King, Zachary A.; Palsson, Bernhard O.ARTICLE38
2011-08The PurR regulon in Escherichia coli K-12 MG1655Cho, Byung-Kwan; Federowicz, Stephen A.; Embree, Mallory; Park, Young-Seoub; Kim, Donghyuk; Palsson, Bernhard O.ARTICLE222
Showing results 1 to 18 of 18