| 2019-02 | A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol | Anh Duc Nguyen; Kim, Donghyuk; Lee, Eun Yeol | ARTICLE | 552 |
| 2023-01 | A Machine Learning Approach Reveals a Microbiota Signature for Infection with Mycobacterium avium subsp. paratuberculosis in Cattle | Lee, Sang-Mok; Park, Hong-Tae; Park, Seojoung; Lee, Jun Ho; Kim, Danil; Yoo, Han Sang; Kim, Donghyuk | ARTICLE | 63 |
| 2022-06-23 | Adaptive laboratory evolution guided engineering of an Embden-Meyerhof-Parnas pathway disrupted Escherichia coli and its application to produce 3-hydroxypropionic acid and lycopene | Cho, Kyung Hyun; Kim, Ye Eun; Bang, Ina; Kim, Chang Hee; Ryu, Young Shin; Kim, Yuchan; Choi, Eun Mi; Nong, Linh, Khanh; Kim, Donghyuk; Lee, Sung Kuk | CONFERENCE | 85 |
| 2022-06-23 | Adaptive laboratory evolution guided engineering of an Embden-Meyerhof-Parnas pathway disrupted Escherichia coli and its application to produce 3-hydroxypropionic acid and lycopene | Cho, Kyung Hyun; Kim, Ye Eun; Bang, Ina; Kim, Chang Hee; Ryu, Young Shin; Kim, Yuchan; Choi, Eun Mi; Nong, Linh Khanh; Kim, Donghyuk; Lee, Sung Kuk | CONFERENCE | 72 |
| 2020-11 | Adaptive laboratory evolution of Escherichia coli lacking cellular byproduct formation for enhanced acetate utilization through compensatory ATP consumption | Seong, Wonjae; Han, Gui Hwan; Lim, Hyun Seung; Baek, Ji In; Kim, Soo-Jung; Kim, Donghyuk; Kim, Seong Keun; Lee, Hyewon; Kim, Haseong; Lee, Seung-Goo; Lee, Dae-Hee | ARTICLE | 303 |
| 2021-03 | Alpha-2-Macroglobulin as a New Promising Biomarker Improving the Diagnostic Sensitivity of Bovine Paratuberculosis | Park, Hyun-Eui; Park, Jin-Sik; Park, Hong-Tae; Choi, Jeong-Gyu; Shin, Jeong-Ih; Jung, Myunghwan; Kang, Hyung-Lyun; Baik, Seung-Chul; Lee, Woo-Kon; Kim, Donghyuk; Yoo, Han Sang; Shin, Min-Kyoung | ARTICLE | 421 |
| 2018-10 | Basics of genome-scale metabolic modeling and applications on C1-utilization | Kabimoldayev, Ilyas; Anh Duc Nguyen; Yang, Laurence; Park, Sunghoon; Lee, Eun Yeol; Kim, Donghyuk | ARTICLE | 548 |
| 2019-07 | Cellular responses to reactive oxygen species are predicted from molecular mechanisms | Yang, Laurence; Mih, Nathan; Anand, Amitesh; Park, Joon Ho; Tan, Justin; Yurkovich, James T.; Monk, Jonathan M.; Lloyd, Colton J.; Sandberg, Troy E.; Seo, Sang Woo; Kim, Donghyuk; Sastry, Anand, V; Phaneuf, Patrick; Gao, Ye; Broddrick, Jared T.; Chen, Ke; Heckmann, David; Szubin, Richard; Hefner, Ying; Feist, Adam M.; Palsson, Bernhard O. | ARTICLE | 508 |
| 2022-11 | Characterization of an Entner-Doudoroff pathway-activated Escherichia coli | Kim, Ye Eun; Cho, Kyung Hyun; Bang, Ina; Kim, Chang Hee; Ryu, Young Shin; Kim, Yuchan; Choi, Eun Mi; Nong, Linh Khanh; Kim, Donghyuk; Lee, Sung Kuk | ARTICLE | 337 |
| 2023-01 | Characterization of Klebsiella pneumoniae bacteriophages, KP1 and KP12, with deep learning-based structure prediction | Kim, Youngju; Lee, Sang-Mok; Nong, Linh Khanh; Kim, Jaehyung; Kim, Seung Bum; Kim, Donghyuk | ARTICLE | 95 |
| 2018-10 | Characterization of the Lytic Bacteriophage phiEaP-8 Effective against Both Erwinia amylovora and Erwinia pyrifoliae Causing Severe Diseases in Apple and Pear | Park, Jungkum; Lee, Gyu Min; Kim, Donghyuk; Park, Duck Hwan; Oh, Chang-Sik | ARTICLE | 666 |
| 2018-10 | Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow | Brunk, Elizabeth; Chang, Roger L.; Xia, Jing; Hefzi, Hooman; Yurkovich, James T.; Kim, Donghyuk; Buckmiller, Evan; Wang, Harris H.; Cho, Byung-Kwan; Yang, Chen; Palsson, Bernhard O.; Church, George M.; Lewis, Nathan E. | ARTICLE | 550 |
| 2022-12 | ChEAP: ChIP-exo analysis pipeline and the investigation of Escherichia coli RpoN protein-DNA interactions | Bang, Ina; Nong, Linh Khanh; Park, Joon Young; Le, Hoa Thi; Lee, Sang-Mok; Kim, Donghyuk | ARTICLE | 70 |
| 2012-08 | Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling | Kim, Donghyuk; Hong, Jay Sung-Joong; Qiu, Yu; Nagarajan, Harish; Seo, Joo-Hyun; Cho, Byung-Kwan; Tsai, Shih-Feng; Palsson, Bernhard O. | ARTICLE | 534 |
| 2020-10 | Comparative Genome Analysis Reveals Natural Variations in the Genomes of Erwinia pyrifoliae, a Black Shoot Blight Pathogen in Apple and Pear | Lee, Gyu Min; Ko, Seyoung; Oh, Eom-Ji; Song, Yu-Rim; Kim, Donghyuk; Oh, Chang-Sik | ARTICLE | 374 |
| 2022-01 | Comparative genomic analysis of plasmids encoding metallo-beta-lactamase NDM-5 in Enterobacterales Korean isolates from companion dogs | Kyung, Su Min; Choi, Sung-Woon; Lim, Jaewon; Shim, Soojin; Kim, Suji; Im, Young Bin; Lee, Na-Eun; Hwang, Cheol-Yong; Kim, Donghyuk; Yoo, Han Sang | ARTICLE | 355 |
| 2020-03 | Comprehensive Genome Analysis on the Novel Species Sphingomonas panacis DCY99(T) Reveals Insights into Iron Tolerance of Ginseng | Kim, Yeon-Ju; Park, Joon Young; Balusamy, Sri Renukadevi; Huo, Yue; Nong, Linh Khanh; Le, Hoa Thi; Yang, Deok Chun; Kim, Donghyuk | ARTICLE | 854 |
| 2018-10-26 | Computational Approaches to Study Metabolism for C1 Bioconversion | Kim, Donghyuk | CONFERENCE | 350 |
| 2018-10 | Coordination-driven self-assembly and anticancer studies of thiophene-derived donor and arene ruthenium acceptors | Kim, Taegeun; Song, Hae Seong; Singh, Jatinder; Kim, Donghyuk; Kim, Hyunuk; Kang, Se Chan; Chi, Ki-Whan | ARTICLE | 779 |
| 2017-07 | Coordination-Driven Self-Assembly Using Ditopic Pyridyl-Pyrazolyl Donor and p-Cymene Ru(II) Acceptors: [2]Catenane Synthesis and Anticancer Activities | Jo, Jae-Ho; Singh, Nem; Kim, Donghyuk; Cho, Se Min; Mishra, Anurag; Kim, Hyunuk; Kang, Se Chan; Chi, Ki-Whan | ARTICLE | 734 |
