| 2017-10 | An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues | Corces, M. Ryan; Trevino, Alexandro E.; Hamilton, Emily G.; Greenside, Peyton G.; Sinnott-Armstrong, Nicholas A.; Vesuna, Sam; Satpathy, Ansuman T.; Rubin, Adam J.; Montine, Kathleen S.; Wu, Beijing; Kathiria, Arwa; Cho, Seung Woo; Mumbach, Maxwell R.; Carter, Ava C.; Kasowski, Maya; Orloff, Lisa A.; Risca, Viviana I.; Kundaje, Anshul; Khavari, Paul A.; Montine, Thomas J.; Greenleaf, William J.; Chang, Howard Y. | ARTICLE | 411 |
| 2014-01 | Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases | Cho, Seung Woo; Kim, Sojung; Kim, Yongsub; Kweon, Jiyeon; Kim, Heon Seok; Bae, Sangsu; Kim, Jin-Soo | ARTICLE | 367 |
| 2016-12 | ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing | Chen, Xingqi; Shen, Ying; Draper, Will; Buenrostro, Jason D.; Litzenburger, Ulrike; Cho, Seung Woo; Satpathy, Ansuman T.; Carter, Ava C.; Ghosh, Rajarshi P.; East-Seletsky, Alexandra; Doudna, Jennifer A.; Greenleaf, William J.; Liphardt, Jan T.; Changsites, Howard Y. | ARTICLE | 362 |
| 2020-12 | Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set | Kebschull, Justus M.; Richman, Ethan B.; Ringach, Noam; Friedmann, Drew; Albarran, Eddy; Kolluru, Sai Saroja; Jones, Robert C.; Allen, William E.; Wang, Ying; Cho, Seung Woo; Zhou, Huaijun; Ding, Jun B.; Chang, Howard Y.; Deisseroth, Karl; Quake, Stephen R.; Luo, Liqun | ARTICLE | 81 |
| 2021-02 | Chromatin accessibility of circulating CD8(+) T cells predicts treatment response to PD-1 blockade in patients with gastric cancer | Shin, Hyun Mu; Kim, Gwanghun; Kim, Sangjib; Sim, Ji Hyun; Choi, Jiyeob; Kim, Minji; Kwon, Minsuk; Ye, Sang-Kyu; Lee, Dong-Sup; Cho, Seung Woo; Kim, Seung Tae; Lee, Jeeyun; Kim, Hang-Rae | ARTICLE | 165 |
| 2019-01 | Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks | Rubin, Adam J.; Parker, Kevin R.; Satpathy, Ansuman T.; Qi, Yanyan; Wu, Beijing; Ong, Alvin J.; Mumbach, Maxwell R.; Ji, Andrew L.; Kim, Daniel S.; Cho, Seung Woo; Zarnegar, Brian J.; Greenleaf, William J.; Chang, Howard Y.; Khavari, Paul A. | ARTICLE | 758 |
| 2015-01 | CRISPR engineering turns on genes | Cho, Seung Woo; Chang, Howard Y. | ARTICLE | 393 |
| 2017-01 | CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells | Liu, S. John; Horlbeck, Max A.; Cho, Seung Woo; Birk, Harjus S.; Malatesta, Martina; He, Daniel; Attenello, Frank J.; Villalta, Jacqueline E.; Cho, Min Y.; Chen, Yuwen; Mandegar, Mohammad A.; Olvera, Michael P.; Gilbert, Luke A.; Conklin, Bruce R.; Chang, Howard Y.; Weissman, Jonathan S.; Lim, Daniel A. | ARTICLE | 385 |
| 2020-02 | CRISPRpic: fast and precise analysis for CRISPR-induced mutations via prefixed index counting | Lee, HoJoon; Chang, Howard Y; Cho, Seung Woo; Ji, Hanlee P | ARTICLE | 185 |
| 2015-11 | DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins | Woo, Je Wook; Kim, Jungeun; Il Kwon, Soon; Corvalan, Claudia; Cho, Seung Woo; Kim, Hyeran; Kim, Sang-Gyu; Kim, Sang-Tae; Choe, Sunghwa; Kim, Jin-Soo | ARTICLE | 603 |
| 2017-11 | Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements | Mumbach, Maxwell R.; Satpathy, Ansuman T.; Boyle, Evan A.; Dai, Chao; Gowen, Benjamin G.; Cho, Seung Woo; Nguyen, Michelle L.; Rubin, Adam J.; Granja, Jeffrey M.; Kazane, Katelynn R.; Wei, Yuning; Nguyen, Trieu; Greenside, Peyton G.; Corces, M. Ryan; Tycko, Josh; Simeonov, Dimitre R.; Suliman, Nabeela; Li, Rui; Xu, Jin; Flynn, Ryan A.; Kundaje, Anshul; Khavari, Paul A.; Marson, Alexander; Corn, Jacob E.; Quertermous, Thomas; Greenleaf, William J.; Chang, Howard Y. | ARTICLE | 393 |
| 2013-11 | Heritable Gene Knockout in Caenorhabditis elegans by Direct Injection of Cas9-sgRNA Ribonucleoproteins | Cho, Seung Woo; Lee, Jihyun; Carroll, Dana; Kim, Jin-Soo; Lee, Junho | ARTICLE | 399 |
| 2014-06 | Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins | Kim, Sojung; Kim, Daesik; Cho, Seung Woo; Kim, Jungeun; Kim, Jin-Soo | ARTICLE | 378 |
| 2018-05 | Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element | Cho, Seung Woo; Xu, Jin; Sun, Ruping; Mumbach, Maxwell R.; Carter, Ava C.; Chen, Y. Grace; Yost, Kathryn E.; Kim, Jeewon; He, Jing; Nevins, Stephanie A.; Chin, Suet-Feung; Caldas, Carlos; Liu, S. John; Horlbeck, Max A.; Lim, Daniel A.; Weissman, Jpnathan S.; Curtis, Christina; Chang, Howard Y. | ARTICLE | 395 |
| 2015-01 | Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles | Hyun, Youbong; Kim, Jungeun; Cho, Seung Woo; Choi, Yeonhee; Kim, Jin-Soo; Coupland, George | ARTICLE | 368 |
| 2020-05 | Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation | Carter, Ava C.; Xu, Jin; Nakamoto, Meagan Y.; Wei, Yuning; Zarnegar, Brian J.; Shi, Quanming; Broughton, James P.; Ransom, Ryan C.; Salhotra, Ankit; Nagaraja, Surya D.; Li, Rui; Dou, Diana R.; Yost, Kathryn E.; Cho, Seung Woo; Mistry, Anil; Longaker, Michael T.; Khavari, Paul A.; Batey, Robert T.; Wuttke, Deborah S.; Chang, Howard Y. | ARTICLE | 181 |
| 2020-05 | Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation | Carter, Ava C.; Xu, Jin; Nakamoto, Meagan Y.; Wei, Yuning; Zarnegar, Brian J.; Shi, Quanming; Broughton, James P.; Ransom, Ryan C.; Salhotra, Ankit; Nagaraja, Surya D.; Li, Rui; Dou, Diana R.; Yost, Kathryn E.; Cho, Seung Woo; Mistry, Anil; Longaker, Michael T.; Khavari, Paul A.; Batey, Robert T.; Wuttke, Deborah S.; Chang, Howard Y. | ARTICLE | 59 |
| 2014-02 | Surrogate reporter-based enrichment of cells containing RNA-guided Cas9 nuclease-induced mutations | Ramakrishna, Suresh; Cho, Seung Woo; Kim, Sojung; Song, Myungjae; Gopalappa, Ramu; Kim, Jin-Soo; Kim, Hyongbum | ARTICLE | 378 |
| 2009-07 | Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly | Kim, Hye Joo; Lee, Hyung Joo; Kim, Hyojin; Cho, Seung Woo; Kim, Jin-Soo | ARTICLE | 394 |
| 2013-03 | Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease | Cho, Seung Woo; Kim, Sojung; Kim, Jong Min; Kim, Jin-Soo | ARTICLE | 415 |
