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Author

Lee, Chang Hyeong
Stochastic Analysis & Simulation(SAS) Lab
Research Interests
  • Stochastic analysis/computation, epidemic modeling, biological system simulation

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A moment closure method for stochastic chemical reaction networks with general kinetics

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Title
A moment closure method for stochastic chemical reaction networks with general kinetics
Author
Lee, Chang Hyeong
Issue Date
201312
Publisher
UNIV KRAGUJEVAC
Citation
MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, v.70, no.3, pp.785 - 800
Abstract
The moment closure method is an approximation method for describing the stochastic dynamics of chemical reaction networks. In this paper we develop a moment closure method for stochastically modeled chemical reaction networks with general reaction rate laws including mass action, rational and fractional rate laws. Based on the Taylor formula of the reaction rate functions and truncation at a certain order of moment, we find a closed system of equations for the moments. We show the accuracy and efficiency of the method by comparing the simulation results of motivating examples obtained by the moment closure method and the stochastic simulation algorithm.
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ISSN
0340-6253
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